PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA26G00576
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family B3
Protein Properties Length: 181aa    MW: 20907.1 Da    PI: 9.902
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA26G00576genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3451.9e-1426114398
                 EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 k l+ +++l+s+++ +p +f++ hg+k   sk +tl+++ g + +++l  ++ ++++++++GW eF++a+ + eg  ++F+++g+s+f  +v +f+
  AA26G00576  26 K-LILPSTLNSKMMKIPSRFVKIHGSK--LSKFVTLKTPVGFERSIQL--KRIGEEIWFQEGWIEFAEAHSIAEGHLLMFEFNGKSTF--RVVIFD 114
                 4.44456677778********988877..8999***************..*******************************9998888..888887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.46E-2120115IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.4E-2022114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.89923116IPR003340B3 DNA binding domain
CDDcd100171.61E-1324114No hitNo description
SMARTSM010196.8E-1624116IPR003340B3 DNA binding domain
PfamPF023621.7E-1225114IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MKTRVTSASS RRPPSYPVSP VTKFLKLILP STLNSKMMKI PSRFVKIHGS KLSKFVTLKT  60
PVGFERSIQL KRIGEEIWFQ EGWIEFAEAH SIAEGHLLMF EFNGKSTFRV VIFDVTAAEI  120
KYPFDEDKDV EIIDNSDDSD HKPKKRTSDF DFQKILIDID AMDSREALKE DKRVFRGKQS  180
F
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_192068.11e-67AP2/B3 domain-containing protein
SwissprotQ9ZSH71e-69Y4158_ARATH; B3 domain-containing protein At4g01580
TrEMBLA0A087FZC06e-66A0A087FZC0_ARAAL; B3 domain-containing protein
STRINGAT4G01580.14e-67(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15912578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.12e-65B3 family protein